earticle

논문검색

Framework for organizing metabolic flux profiles

초록

영어

Metabolic flux distributions are an ultimate cellular phenotype as an outcome of interplays among various cell components. They are condition-specific, so that they have been obtained separately under specified conditions. Their integral analysis obtained from various conditions could provide further insight into the science of metabolic fluxes. For this, we developed a framework that sequentially employs constraint-based flux analysis and Bayesian network analysis, which ultimately yields causal network of metabolic fluxes based on specified
conditions. Constraint-based flux analysis is a simulation method of a stoichiometric model using various optimization techniques. Bayesian network is a probabilistic graphical model that reveals causal relationships among parameters of interest and is useful for data integration. This framework enables integration of metabolic fluxes, which could supplement metabolic flux analysis. [This work was supported by the Korea Science and Engineering Foundation (KOSEF) grant funded by the Korea government (MOST) (No. M10309020000-03B5002-00000).
Further supports by LG Chem Chair Professorship, Microsoft and IBM SUR program are appreciated.]

저자정보

  • Hyun Uk Kim Department of Chemical and Biomolecular Engineering (BK21 program), Metabolic and Biomolecular Engineering National Research Laboratory, Center for Systems and Synthetic Biotechnology, Institute for the BioCentury
  • Tae Yong Kim Department of Chemical and Biomolecular Engineering (BK21 program), Metabolic and Biomolecular Engineering National Research Laboratory, Center for Systems and Synthetic Biotechnology, Institute for the BioCentury
  • Sang Yup Lee Department of Chemical and Biomolecular Engineering (BK21 program), Metabolic and Biomolecular Engineering National Research Laboratory, Center for Systems and Synthetic Biotechnology, Institute for the BioCentury, Department of BioSystems, BioProcess Engineering Research Center,and Bioinformatics Research Center, Korea Advanced Institute of Science and Technology (KAIST)

참고문헌

자료제공 : 네이버학술정보

    함께 이용한 논문

      ※ 원문제공기관과의 협약기간이 종료되어 열람이 제한될 수 있습니다.

      0개의 논문이 장바구니에 담겼습니다.