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3D-QSAR, Docking and Molecular Dynamics Simulation Study of C-Glycosylflavones as GSK-3β Inhibitors

초록

영어

Abnormal regulation, hyperphosphorylation, and aggregation of the tau protein are the hallmark of several types of dementia, including Alzheimer's Disease. Increased activity of Glycogen Synthase Kinase-3β (GSK-3β) in the Central Nervous System (CNS), increased the tau hyperphosphorylation and caused the neurofibrillary tangles (NFTs) formation in the brain cells. Over the last two decades, numerous adenosine triphosphate (ATP) competitive inhibitors have been discovered that show inhibitory activity against GSK-3β. But these compounds exhibited off-target effects which motivated researchers to find new GSK-3β inhibitors. In the present study, we have collected the dataset of 31 C-Glycosylflavones derivatives that showed inhibitory activity against GSK-3β. Among the dataset, the most active compound was docked with the GSK-3β and molecular dynamics (MD) simulation was performed for 50 ns. Based on the 50 ns MD pose of the most active compound, the other dataset compounds were sketched, minimized, and aligned. The 3D-QSAR based Comparative Molecular Field Analysis (CoMFA) model was developed, which showed a reasonable value of q 2=0.664 and r 2=0.920. The contour maps generated based on the CoMFA model elaborated on the favorable substitutions at the R2 position. This study could assist in the future development of new GSK-3β inhibitors.

목차

Abstract
Introduction
Methodology
Molecular Docking
Molecular Dynamics (MD) Simulation and Data Analysis
CoMFA
Results and Discussions
Molecular Docking Analysis
MD Simulation and MM/PBSA Analysis
CoMFA Model Study
Conclusion
Acknowledgment
References

저자정보

  • Suparna Ghosh Department of Biomedical Sciences, College of Medicine, Chosun University
  • Seketoulie Keretsu Department of Biomedical Sciences, College of Medicine, Chosun University
  • Seung Joo Cho Department of Biomedical Sciences, College of Medicine, Chosun University, Department of Cellular Molecular Medicine, College of Medicine, Chosun University,

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