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String Matching Evaluation Methods for DNA Comparison

초록

영어

Studying patterns in DNA sequences has been for years the subject of many research papers in bioinformatics. This paper evaluates two algorithms used for DNA comparison. Those are: Longest Common Substring and Subsequence (LCS, LCSS). Evaluation is performed based on the different code implementations for those two algorithms. Accuracy and performance are the two major criteria that are used for the evaluation of algorithms’ implementation. Results showed that while those two algorithms are popular, their implementations are not consistent through research papers or websites that use and implement those algorithms for DNA sequence comparison.

목차

Abstract
 1. Introduction
  1.1 Techniques to Detect Documents Similarity
  1.2. Why DNA Sequence Comparison?
  1.3. DNA Sequence Alignment
  1.4 DNA Comparison and Analysis Tools
  1.5 DNA Document Similarity Applications and Algorithms.
 2. Related Work
 3- Goals and Approaches
  3.1 LCS Pseudo Codes
  3.2 LCSS Algorithms
 4. Case Study
 5. Analysis and Comparison
 6. Conclusion
 References

저자정보

  • Izzat Alsmadi Computer Information Systems Dept. / Yarmouk University
  • Maryam Nuser Computer Information Systems Dept. / Yarmouk University

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