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Prediction of Binding Free Energy Calculation Using Molecular Mechanics/Poisson-Boltzmann Surface Area (MM-PBSA) Method in Drug Discovery: A Short Review

원문정보

Gugan Kothandan, Seung Joo Cho

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초록

영어

Structure-based drug design possibly benefit from in silico methods that precisely predict the binding affinity of small molecules to target macromolecules. There are many limitations arise from the difficulty of predicting the binding affinity of a small molecule to a biological target with the current scoring functions. There is thus a strong interest in novel methodologies based on MD simulations that claim predictions of greater accuracy than current scoring functions, helpful for a regular use designed for drug discovery in the pharmaceutical industry. Herein, we report a short review on free energy calculations using MMPBSA method a useful method in structure based drug discovery.

목차

Abstract
 1. Introduction
 2. Experimental Section
 3. Results and Discussion
  3.1. Limitations of MMPBSA
  3.2. Successful Applications of MMPBSA
 4. Conclusion
 Acknowledgements
 References

키워드

  • Structure-based Drug Design
  • Molecular Dynamics
  • MMPBSA
  • Free Energy Calculations

저자정보

  • Gugan Kothandan Department of Biochemistry, Centre for Bioinformatics, University of Madras, Guindy campus, Guindy, Chennai-600025, India
  • Seung Joo Cho 조승주. Department of Bio-New Drug Development, College of Medicine, Chosun University, Department of Cellular · Molecular Medicine, College of Medicine, Chosun University

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